PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009765793.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family FAR1
Protein Properties Length: 700aa    MW: 80170.2 Da    PI: 8.1526
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009765793.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR164.92.2e-2083176190
            FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 
                     +fY e+A+ +GFs+r+++++ +    +  t+r fvC + g++  +  +++k +r+r+++r+gC+a ++++k++     +w+vt + ++HnHel 
  XP_009765793.1  83 EFYAEFARGCGFSIRRHRTEGKdGVGKGLTRRYFVCHRAGNTPVKAANDNKPQRNRKSSRCGCQAYMRISKTTdlgVPEWRVTGFMNHHNHELL 176
                     6**************9998877356667999****************99**********************99777789*************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.5E-1783176IPR004330FAR1 DNA binding domain
PfamPF105511.2E-20299390IPR018289MULE transposase domain
PROSITE profilePS509669.705577610IPR007527Zinc finger, SWIM-type
PfamPF044343.1E-7580608IPR007527Zinc finger, SWIM-type
SMARTSM005754.2E-6585612IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 700 aa     Download sequence    Send to blast
MKPLVRFSDP VCTEQYLDKF IMSEEAGQMM VLYGDSSDQR SLSLDDTSST EESPDQTRLS  60
LETTNDAVPY IGQRFPTHDA AYEFYAEFAR GCGFSIRRHR TEGKDGVGKG LTRRYFVCHR  120
AGNTPVKAAN DNKPQRNRKS SRCGCQAYMR ISKTTDLGVP EWRVTGFMNH HNHELLEPNQ  180
VRFLPAYRSI SDSDKSRILM FAKTGISVQQ MMRLMELEKG VEPGFLPFTE KDVRNLLQSF  240
RKVDPEDESI DLLRMCRSIK EKDPNFKYDF SLDSNNRLEN IAWSYASSIQ SYDVFGDAVV  300
FDTTHRLTAF DMPLGIWVGV NNYGMPCFFG CVLLREETLR SYSWSLKAFL AFMNGKAPQT  360
VLTDQNMCLK EAINLEMPST KHALCIWLIV SKFPSWFNAV LGVRYNDWKA EFHRLYNLES  420
VEDFELGWRD MVNSFGLHTN RHIASLFALR SLWALPYLRS HVFAGMTTAG HSKSINAFIQ  480
RFLSAQTRLA HFVEQVAVTV DFKDQAGEQQ TMQQNLQNIC LKTGAPMEAH AATVLTPFAF  540
SKLQEQLVLA AHYASFQTED SFLVRHHTKL EGGRKVYWVP REGIISCSCH QFEFSGILCR  600
HALRVLSTGN CFQIPDRYLP HRWRRISTPS TKSLQNTHND HTERVQLLQS MVSTLVTESA  660
KSRERLEIAT ENVSILLSRI REQPICSQGV RELSSNQRNI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755130.0HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009765793.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 11 isoform X1
SwissprotQ9SY660.0FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBLK4B1P40.0K4B1P4_SOLLC; Uncharacterized protein
STRINGSolyc01g103180.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA108962124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.10.0FAR1-related sequence 11